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pooled cell type-specific atac-seq data  (Allen Institute for Brain Science)

 
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    Allen Institute for Brain Science pooled cell type-specific atac-seq data
    Grin1 mRNA expression in Vglut + ( a ) and Gad1 + ( b ) cells in the adult mouse somatosensory cortex (1.53 mm lateral from midline). Grin1 (orange), Vglut1 (green) and Gad1 (yellow) mRNA was visualised in mouse sagittal sections (20 µm) with fluorescent in situ hybridisation in WT, Grin1 KD , and Grin1 RESCUE mice. Solid white arrows indicate cells with Grin1 expression, red arrows indicate cells without Grin1 expression. c Grin1 gene expression levels and d Grin1 chromatin accessibility in wild-type adult mouse visual cortex glutamatergic ( Vglut1 +) and GABAergic ( Gad1 +) cells. Data are from publicly-accessible <t>single-cell</t> <t>transcriptomics</t> data and pooled cell type-specific <t>ATAC-seq</t> data provided by the Allen Institute for Brain Science. Transcriptomic data are quantified as counts per million reads sequenced (CPM) and are based on exonic reads only. ATAC-seq data are quantified as counts per million nucleotides in locus. To aid visualisation, only cells up to the 95th percentile of Grin1 expression or coverage are shown. Data shown as box and whisker plots, 5–95 percentile, Wilcoxon rank-sum test between GLU and GABA.
    Pooled Cell Type Specific Atac Seq Data, supplied by Allen Institute for Brain Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/pooled+cell+type-specific+atac-seq+data/pmc08505246-48-11-20?v=Allen+Institute+for+Brain+Science
    Average 90 stars, based on 1 article reviews
    pooled cell type-specific atac-seq data - by Bioz Stars, 2026-07
    90/100 stars

    Images

    1) Product Images from "Consequences of NMDA receptor deficiency can be rescued in the adult brain"

    Article Title: Consequences of NMDA receptor deficiency can be rescued in the adult brain

    Journal: Molecular Psychiatry

    doi: 10.1038/s41380-020-00859-4

    Grin1 mRNA expression in Vglut + ( a ) and Gad1 + ( b ) cells in the adult mouse somatosensory cortex (1.53 mm lateral from midline). Grin1 (orange), Vglut1 (green) and Gad1 (yellow) mRNA was visualised in mouse sagittal sections (20 µm) with fluorescent in situ hybridisation in WT, Grin1 KD , and Grin1 RESCUE mice. Solid white arrows indicate cells with Grin1 expression, red arrows indicate cells without Grin1 expression. c Grin1 gene expression levels and d Grin1 chromatin accessibility in wild-type adult mouse visual cortex glutamatergic ( Vglut1 +) and GABAergic ( Gad1 +) cells. Data are from publicly-accessible single-cell transcriptomics data and pooled cell type-specific ATAC-seq data provided by the Allen Institute for Brain Science. Transcriptomic data are quantified as counts per million reads sequenced (CPM) and are based on exonic reads only. ATAC-seq data are quantified as counts per million nucleotides in locus. To aid visualisation, only cells up to the 95th percentile of Grin1 expression or coverage are shown. Data shown as box and whisker plots, 5–95 percentile, Wilcoxon rank-sum test between GLU and GABA.
    Figure Legend Snippet: Grin1 mRNA expression in Vglut + ( a ) and Gad1 + ( b ) cells in the adult mouse somatosensory cortex (1.53 mm lateral from midline). Grin1 (orange), Vglut1 (green) and Gad1 (yellow) mRNA was visualised in mouse sagittal sections (20 µm) with fluorescent in situ hybridisation in WT, Grin1 KD , and Grin1 RESCUE mice. Solid white arrows indicate cells with Grin1 expression, red arrows indicate cells without Grin1 expression. c Grin1 gene expression levels and d Grin1 chromatin accessibility in wild-type adult mouse visual cortex glutamatergic ( Vglut1 +) and GABAergic ( Gad1 +) cells. Data are from publicly-accessible single-cell transcriptomics data and pooled cell type-specific ATAC-seq data provided by the Allen Institute for Brain Science. Transcriptomic data are quantified as counts per million reads sequenced (CPM) and are based on exonic reads only. ATAC-seq data are quantified as counts per million nucleotides in locus. To aid visualisation, only cells up to the 95th percentile of Grin1 expression or coverage are shown. Data shown as box and whisker plots, 5–95 percentile, Wilcoxon rank-sum test between GLU and GABA.

    Techniques Used: Expressing, In Situ, Hybridization, Single-cell Transcriptomics, Whisker Assay



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    pooled cell type-specific atac-seq data  (Allen Institute for Brain Science)
    90
    Allen Institute for Brain Science pooled cell type-specific atac-seq data
    Grin1 mRNA expression in Vglut + ( a ) and Gad1 + ( b ) cells in the adult mouse somatosensory cortex (1.53 mm lateral from midline). Grin1 (orange), Vglut1 (green) and Gad1 (yellow) mRNA was visualised in mouse sagittal sections (20 µm) with fluorescent in situ hybridisation in WT, Grin1 KD , and Grin1 RESCUE mice. Solid white arrows indicate cells with Grin1 expression, red arrows indicate cells without Grin1 expression. c Grin1 gene expression levels and d Grin1 chromatin accessibility in wild-type adult mouse visual cortex glutamatergic ( Vglut1 +) and GABAergic ( Gad1 +) cells. Data are from publicly-accessible <t>single-cell</t> <t>transcriptomics</t> data and pooled cell type-specific <t>ATAC-seq</t> data provided by the Allen Institute for Brain Science. Transcriptomic data are quantified as counts per million reads sequenced (CPM) and are based on exonic reads only. ATAC-seq data are quantified as counts per million nucleotides in locus. To aid visualisation, only cells up to the 95th percentile of Grin1 expression or coverage are shown. Data shown as box and whisker plots, 5–95 percentile, Wilcoxon rank-sum test between GLU and GABA.
    Pooled Cell Type Specific Atac Seq Data, supplied by Allen Institute for Brain Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/pooled+cell+type-specific+atac-seq+data/pmc08505246-48-11-20?v=Allen+Institute+for+Brain+Science
    Average 90 stars, based on 1 article reviews
    pooled cell type-specific atac-seq data - by Bioz Stars, 2026-07
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Grin1 mRNA expression in Vglut + ( a ) and Gad1 + ( b ) cells in the adult mouse somatosensory cortex (1.53 mm lateral from midline). Grin1 (orange), Vglut1 (green) and Gad1 (yellow) mRNA was visualised in mouse sagittal sections (20 µm) with fluorescent in situ hybridisation in WT, Grin1 KD , and Grin1 RESCUE mice. Solid white arrows indicate cells with Grin1 expression, red arrows indicate cells without Grin1 expression. c Grin1 gene expression levels and d Grin1 chromatin accessibility in wild-type adult mouse visual cortex glutamatergic ( Vglut1 +) and GABAergic ( Gad1 +) cells. Data are from publicly-accessible single-cell transcriptomics data and pooled cell type-specific ATAC-seq data provided by the Allen Institute for Brain Science. Transcriptomic data are quantified as counts per million reads sequenced (CPM) and are based on exonic reads only. ATAC-seq data are quantified as counts per million nucleotides in locus. To aid visualisation, only cells up to the 95th percentile of Grin1 expression or coverage are shown. Data shown as box and whisker plots, 5–95 percentile, Wilcoxon rank-sum test between GLU and GABA.

    Journal: Molecular Psychiatry

    Article Title: Consequences of NMDA receptor deficiency can be rescued in the adult brain

    doi: 10.1038/s41380-020-00859-4

    Figure Lengend Snippet: Grin1 mRNA expression in Vglut + ( a ) and Gad1 + ( b ) cells in the adult mouse somatosensory cortex (1.53 mm lateral from midline). Grin1 (orange), Vglut1 (green) and Gad1 (yellow) mRNA was visualised in mouse sagittal sections (20 µm) with fluorescent in situ hybridisation in WT, Grin1 KD , and Grin1 RESCUE mice. Solid white arrows indicate cells with Grin1 expression, red arrows indicate cells without Grin1 expression. c Grin1 gene expression levels and d Grin1 chromatin accessibility in wild-type adult mouse visual cortex glutamatergic ( Vglut1 +) and GABAergic ( Gad1 +) cells. Data are from publicly-accessible single-cell transcriptomics data and pooled cell type-specific ATAC-seq data provided by the Allen Institute for Brain Science. Transcriptomic data are quantified as counts per million reads sequenced (CPM) and are based on exonic reads only. ATAC-seq data are quantified as counts per million nucleotides in locus. To aid visualisation, only cells up to the 95th percentile of Grin1 expression or coverage are shown. Data shown as box and whisker plots, 5–95 percentile, Wilcoxon rank-sum test between GLU and GABA.

    Article Snippet: Data are from publicly-accessible single-cell transcriptomics data [ ] and pooled cell type-specific ATAC-seq data [ ] provided by the Allen Institute for Brain Science.

    Techniques: Expressing, In Situ, Hybridization, Single-cell Transcriptomics, Whisker Assay